PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 362aa    MW: 39984.6 Da    PI: 7.8723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15280305126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yGd C+FaHg
  XP_004497020.1 280 FKTELCNKWQETGTCPYGDHCQFAHG 305
                     79***********************8 PP

2zf-CCCH18.34.1e-06318342125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  XP_004497020.1 318 YKTEVCRMVLA-GvVCPYGHRCHFRH 342
                     9**********.66**********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-19275312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11276311IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004279307IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-12313346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8313347IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859317345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MFNTSPIKMH NKDVCSPSSK GGFGVNTAGH MQSNAGALAS LYSALTNENH PSLSGNCSNG  60
GGVSLYQYSD SGTEYDSCVI QKHQDMVNRH SMCLSRLVET SKEVEALQQE NGQLRALNKE  120
LQKQLNLLIQ ASLENRYGSG GGSSGQTQTT PFDVLHGFHS LNLGDGKENC ADWNNNNINN  180
NNKDLQEVSD ESPTSVIENN GVEVERFSLP KSISVRSNGY LKMAQPPTVA TNNSNACRTK  240
GATRSRASST QPDAVQKVYV RGGQKEEEPL EMVVYNQGMF KTELCNKWQE TGTCPYGDHC  300
QFAHGIGELR PVIRHPRYKT EVCRMVLAGV VCPYGHRCHF RHALNEQERL SQPKPRSMKL  360
ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22280346470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-104AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497020.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X1
SwissprotQ9C9F56e-87C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A072VQ630.0A0A072VQ63_MEDTR; Uncharacterized protein
STRINGGLYMA10G41531.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-81C3H family protein